finance

Tax Penalties and Charges in Kenya 2024

Complete guide to KRA tax penalties, interest charges, and late filing fees for individuals and businesses in Kenya

📅Updated: 2025-06-19

Tax Penalties and Charges in Kenya

Understanding KRA penalties is crucial for tax compliance. Tax offences can attract punitive penalties and interest that significantly increase your tax burden. Here's everything you need to know about avoiding and calculating these charges.

🚨 Critical Information

All penalties are in addition to the original tax due

  • Penalties are calculated as a percentage of tax owed OR a fixed amount
  • Interest compounds monthly at 1% per month
  • Multiple offences can result in criminal prosecution

Individual Tax Return Penalties

Late Filing Penalties

Tax TypeFiling Penalty
Individual Income Tax Returns5% of tax due OR KSh 2,000 (whichever is higher)
Pay-as-you-earn (PAYE)25% of tax due OR KSh 10,000 (whichever is higher)
KRA PIN-related offencesKSh 2,000 per offence

Late Payment Penalties

Tax TypePayment PenaltyMonthly Interest
Individual Income Tax5% of tax due1% per month
PAYE Tax5% of tax due1% per month

Business Tax Penalties

VAT (Value Added Tax)

OffencePenalty
Late filing of VAT Return5% of tax due OR KSh 10,000 (whichever is higher)
Late payment of VAT5% of tax due + 1% monthly interest

Withholding Tax

OffencePenalty
Failure to deduct Withholding VAT/Rental Tax10% of the tax amount involved
Late payment of Withholding Tax5% of tax due

Corporate Tax

OffencePenalty
Late filing - Company/Partnership returns5% of tax due OR KSh 20,000 (whichever is higher)
Late payment - Non-Individual Income Tax5% of tax due + 1% monthly interest

Other Business Taxes

Tax TypeFiling PenaltyPayment Penalty
MRI Returns (Individuals)5% of tax OR KSh 2,000 (higher)5% + 1% monthly interest
MRI Returns (Non-Individuals)5% of tax OR KSh 20,000 (higher)5% + 1% monthly interest
Excise Duty5% of tax OR KSh 10,000 (higher)5% + 1% monthly interest
Stamp DutyN/A5% of duty payable

Penalty Calculation Examples

Example 1: Late Individual Tax Filing

Scenario: Filed 3 months late with KSh 50,000 tax due

Calculation:

  • Filing penalty: 5% of KSh 50,000 = KSh 2,500
  • Payment penalty: 5% of KSh 50,000 = KSh 2,500
  • Interest: 1% × 3 months × KSh 50,000 = KSh 1,500
  • Total penalty: KSh 6,500
  • Total amount due: KSh 56,500

Example 2: Late PAYE Filing

Scenario: Filed 1 month late with KSh 5,000 PAYE tax due

Calculation:

  • Filing penalty: Higher of (25% × KSh 5,000) or KSh 10,000 = KSh 10,000
  • Payment penalty: 5% of KSh 5,000 = KSh 250
  • Interest: 1% × 1 month × KSh 5,000 = KSh 50
  • Total penalty: KSh 10,300
  • Total amount due: KSh 15,300

Example 3: Small Tax Amount

Scenario: Filed 2 months late with KSh 1,000 tax due

Calculation:

  • Filing penalty: Higher of (5% × KSh 1,000) or KSh 2,000 = KSh 2,000
  • Payment penalty: 5% of KSh 1,000 = KSh 50
  • Interest: 1% × 2 months × KSh 1,000 = KSh 20
  • Total penalty: KSh 2,070
  • Total amount due: KSh 3,070

How to Avoid Penalties

1. File on Time

  • Individual returns deadline: June 30, 2025
  • Company returns: 6 months after year-end
  • Monthly returns (VAT, PAYE): 20th of following month

2. Pay on Time

  • Pay immediately after filing
  • Use M-Pesa Paybill or bank transfer
  • Ensure payment reflects in KRA system

3. File NIL Returns

  • File even with zero income
  • Maintains compliance record
  • Prevents accumulation of penalties

4. Monitor Deadlines

  • Set calendar reminders
  • File early to avoid last-minute issues
  • Check KRA website for any deadline changes

Penalty Relief Options

1. Voluntary Disclosure

  • File late returns voluntarily before KRA audit
  • May qualify for penalty reduction
  • Shows good faith compliance effort

2. Appeal Process

  • File objection within 30 days
  • Provide justification for late filing/payment
  • Appeals considered on case-by-case basis

3. Payment Plans

  • Request installment payment arrangement
  • Interest may still apply
  • Must have filed all outstanding returns

2024-Specific Considerations

New Levy Compliance

  • Housing Levy: Ensure proper deduction and remittance
  • SHIF: Replace NHIF from October 2024
  • Transitional period: KRA showing leniency for documented issues

Increased Enforcement

  • Enhanced audit capabilities
  • Stricter penalty enforcement
  • Digital monitoring of compliance

Warning Signs of Penalties

System Alerts

  • iTax login warnings about outstanding returns
  • SMS notifications from KRA
  • Email reminders about approaching deadlines

Business Impact

  • Difficulty obtaining tax compliance certificates
  • Banking restrictions for businesses
  • Tender disqualification

Getting Help

KRA Support

  • Call Center: +254 (020) 4999 999
  • Email: callcentre@kra.go.ke
  • Huduma Centers: In-person assistance
  • Tax agents: For complex situations

Professional Services

  • Licensed tax advisors for penalty disputes
  • Accounting firms for compliance management
  • Legal counsel for serious violations

Key Takeaways

âš ī¸ Penalties are expensive - Often exceed the original tax due

📅 File early - Avoid last-minute technical issues

💰 Pay immediately - Interest compounds monthly

📞 Seek help - KRA provides free guidance for compliance

📋 Keep records - Documentation helps in penalty appeals

Related Resources

References

Official Sources:


Last updated: June 19, 2025

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Do Your Research: While we strive to keep information current and accurate, government processes and requirements can change. We recommend verifying the latest procedures, requirements, and fees directly with the relevant government office or official website before proceeding.

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